We are eager to share our findings and the data we generate. With that, we try to build an open community, where the science is transparent and effective as never before. We both generate our data and reanalyze publicly available datasets. Below you may find our work and the relevant links.
We are currently working on uploading the datasets. Stay tuned!
Human Fetal and Adult Retina - RE, 2022-23, 63k cells
The dataset includes fetal (day 59, 82, 125) and adult timepoints.
This dataset was generated from the publicly available datasets of fetal (Sridhar et al., 2020, Cell Rep.) and adult (Wang et al., 2022, Cell Genom.) datasets.

Tissue: Retina
Primary cell type: Total Retinal
Mouse Adult Retina Dnmt3a cKO - NEW, 2023, 35k cells
The dataset includes Control and Dnmt3a cKO conditions.
This dataset is a de novo generated.

Tissue: Retina
Primary cell type: RGC, includes other cell types
Human reprogrammed Müller glia
The dataset includes fetal (day 59, 82, 125) and adult timepoints.
This dataset was generated from the publicly available datasets of fetal (Sridhar et al., 2020, Cell Rep.) and adult (Wang et al., 2022, Cell Genom.) datasets.
Retinal organoids - Thomas A. Reh Lab
The dataset includes fetal (day 59, 82, 125) and adult timepoints.
This dataset was generated from the publicly available datasets of fetal (Sridhar et al., 2020, Cell Rep.) and adult (Wang et al., 2022, Cell Genom.) datasets.
Zebrafish retina - Seth Blackshaw Lab
The dataset includes fetal (day 59, 82, 125) and adult timepoints.
This dataset was generated from the publicly available datasets of fetal (Sridhar et al., 2020, Cell Rep.) and adult (Wang et al., 2022, Cell Genom.) datasets.
Mouse retinal microglia (WT, MB-induced glaucoma, IGFBPL1) - Dong Feng Chen Lab
The dataset includes fetal (day 59, 82, 125) and adult timepoints.
This dataset was generated from the publicly available datasets of fetal (Sridhar et al., 2020, Cell Rep.) and adult (Wang et al., 2022, Cell Genom.) datasets.
OIR Retinal Microglia - Sun Ye Lab
The dataset includes fetal (day 59, 82, 125) and adult timepoints.
This dataset was generated from the publicly available datasets of fetal (Sridhar et al., 2020, Cell Rep.) and adult (Wang et al., 2022, Cell Genom.) datasets.
Mouse retinal development
The dataset includes fetal (day 59, 82, 125) and adult timepoints.
This dataset was generated from the publicly available datasets of fetal (Sridhar et al., 2020, Cell Rep.) and adult (Wang et al., 2022, Cell Genom.) datasets.
AMD
The dataset includes fetal (day 59, 82, 125) and adult timepoints.
This dataset was generated from the publicly available datasets of fetal (Sridhar et al., 2020, Cell Rep.) and adult (Wang et al., 2022, Cell Genom.) datasets.
Human cutaneous neurofibroma
The dataset includes fetal (day 59, 82, 125) and adult timepoints.
This dataset was generated from the publicly available datasets of fetal (Sridhar et al., 2020, Cell Rep.) and adult (Wang et al., 2022, Cell Genom.) datasets.
OPG NF1
The dataset includes fetal (day 59, 82, 125) and adult timepoints.
This dataset was generated from the publicly available datasets of fetal (Sridhar et al., 2020, Cell Rep.) and adult (Wang et al., 2022, Cell Genom.) datasets.
Transplanted organoids - Mandeep Singh
The dataset includes fetal (day 59, 82, 125) and adult timepoints.
This dataset was generated from the publicly available datasets of fetal (Sridhar et al., 2020, Cell Rep.) and adult (Wang et al., 2022, Cell Genom.) datasets.
WLT
The dataset includes fetal (day 59, 82, 125) and adult timepoints.
This dataset was generated from the publicly available datasets of fetal (Sridhar et al., 2020, Cell Rep.) and adult (Wang et al., 2022, Cell Genom.) datasets.
WLT + ZH ONC data
The dataset includes fetal (day 59, 82, 125) and adult timepoints.
This dataset was generated from the publicly available datasets of fetal (Sridhar et al., 2020, Cell Rep.) and adult (Wang et al., 2022, Cell Genom.) datasets.
Human fetal and adult retina | Controlling donor and newborn neuron migration and maturation in the eye through microenvironment engineering. PNAS, 2023

Relevant links:



Bioinformatics: Emil Kriukov (ekriukov@meei.harvard.edu).

As of today, we have uploaded 1 dataset of 62496 cells!
Combined Horizontal Bar Chart
Site written by Emil Kriukov